PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA001373-PA
Common NameOsI_02504
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 366aa    MW: 39379.3 Da    PI: 4.6866
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA001373-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.37.7e-2622132199
            DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA...........earardPvyGavgvil 81 
                       +CaaCk+lrr+C+++ C lap+fpa+qp++++ v+ +FG+++vl+l +++ +e  +d++ss+vyeA           ea+ rdPv G +gv+ 
  BGIOSGA001373-PA  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVELVFGMRKVLELAHKAGPEYLDDILSSIVYEAvttsppastkaEAWGRDPVWGPTGVVG 114
                       6***********9877************************************************954444444444489************** PP

            DUF260  82 klqqqleqlkaelallke 99 
                       +l+ ++ +++a+la+l+ 
  BGIOSGA001373-PA 115 ALELEIGTARADLAVLQG 132
                       *************99876 PP

2DUF260112.33.3e-35184275191
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
  BGIOSGA001373-PA 184 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 275
                       6***********************9978************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.89321134IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-2122131IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089119.221183285IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-28184275IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MADPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVELVFG  60
MRKVLELAHK AGPEYLDDIL SSIVYEAVTT SPPASTKAEA WGRDPVWGPT GVVGALELEI  120
GTARADLAVL QGQDQDQPPA VATLPKPELV VHPPTMAQDE SKPSSTTSSS SGTTTTTTKK  180
NKPRCAACRY LSRSCWPECL LAPYFPAGQP PAQFGNVHRL FRLNNVLRMM EETRREERDD  240
LMAAIVYEAD AWARDPRYGV AGVVRSLTNE LARVRLDEIA FHLLGTDETY DGYKEEDALA  300
VDPVSGAQAG IGVLGGSGAD LQENTGILLG ADEPGPGELA VDPIKDVFDI DRLLAVDDDL  360
SSGTQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638289.10.0PREDICTED: uncharacterized protein LOC107278430
TrEMBLA2WRM00.0A2WRM0_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA001373-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2318866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.49e-19LBD family protein